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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
89
total RNA-seq
6
WGBS
5
RRBS
4
ATAC-seq
4
DNase-seq
1
FAIRE-seq
0
CRISPR genome editing followed by sgRNA sequencing
Assay category
248
DNA binding
Target of assay
166
histone
166
histone modification
90
broad histone mark
75
narrow histone mark
43
transcription factor
39
control
8
RNA binding protein
3
chromatin remodeller
Date released
248
August, 2017
237
October, 2019
165
May, 2021
120
May, 2019
91
November, 2017
80
April, 2019
74
October, 2018
40
May, 2024
34
December, 2018
32
September, 2018
31
December, 2017
31
June, 2019
25
January, 2019
24
February, 2018
21
August, 2021
21
November, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
1
February, 2023
Available data
156
bam
156
fastq
154
bigWig
115
bed narrowPeak
65
tagAlign
39
bed broadPeak
30
bed bed3+
27
bigBed narrowPeak
13
bigBed broadPeak
Organism
241
Homo sapiens
Biosample type
128
tissue
67
in vitro differentiated cells
53
primary cell
Organ
117
connective tissue
94
pancreas
50
adipose tissue
liver
26
epithelium
22
musculature of body
Project
248
AMP
Genome assembly (visualization)
155
hg19
133
GRCh38
Lab
248
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
15
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
248 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
white adipose tissue
12
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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