Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
531
DNA accessibility
34
3D chromatin structure
1
Transcription
Date released
103
February, 2023
100
May, 2020
79
August, 2021
77
May, 2022
34
May, 2021
28
November, 2019
27
October, 2019
22
February, 2021
14
July, 2019
14
March, 2020
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
5
August, 2017
5
March, 2019
5
September, 2017
3
January, 2018
3
October, 2022
3
September, 2020
2
March, 2023
1
December, 2018
1
November, 2020
Available data
278
bed narrowPeak
175
bam
141
bigWig
64
xls
62
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
23
hic
20
bedpe bed3+
14
tsv
12
bed bed3
9
bed bed3+
7
bed bedgraph
5
hdf5
3
cool
3
txt
2
bed broadPeak
1
bedpe
Organism
565
Homo sapiens
Biosample type
276
tissue
210
primary cell
46
in vitro differentiated cells
33
cell line
1
stem cell
Organ
161
pancreas
111
epithelium
76
kidney
51
blood vessel
51
vasculature
50
heart
45
artery
28
eye
27
liver
26
connective tissue
12
bone element
12
limb
12
skeleton
7
brain
7
musculature of body
6
adipose tissue
2
vein
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
501
AMP
52
HPAP
11
T1D
1
ITG
1
community
Genome assembly (visualization)
288
hg19
236
GRCh38
Lab
369
AMP-T2D consortium
76
Katalin Susztak, Upenn
52
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
47
inconsistent ontology term
4
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
566 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
CRISPRi RNA-seq
tissue
kidney
75
1
islet of Langerhans
68
3
coronary artery
36
liver
20
1
retina
15
+ See 35 more…
primary cell
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 8 more…
cell line
EndoC_BH1
19
1
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
Panc1
1
stem cell
SB Ad3.1
1
See all biosamples
Download