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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA methylation
1
Transcription
Date released
2
August, 2021
1
March, 2023
1
May, 2021
Organism
3
Homo sapiens
Biosample type
2
cell line
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
2
epithelium
2
pancreas
Project
3
AMP
1
community
Lab
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
4 results
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Capture-C
CRISPRi RNA-seq
DNAme array
cell line
EndoC_BH1
2
primary cell
monocyte
1
stem cell
SB Ad3.1
1