Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1420
total RNA-seq
1347
ChIP-seq
502
ATAC-seq
363
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
210
DNA accessibility
Date released
187
June, 2019
9
November, 2018
8
October, 2019
5
August, 2017
2
August, 2021
1
November, 2020
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
205
bed bed3+
205
bed broadPeak
205
bigBed broadPeak
12
fastq
Organism
212
Homo sapiens
Biosample type
178
tissue
31
primary cell
cell line
3
in vitro differentiated cells
Organ
80
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
11
connective tissue
11
vasculature
9
blood vessel
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
212
AMP
Genome assembly (visualization)
205
GRCh38
186
hg19
Lab
210
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
212 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Capture-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
See all biosamples
Download