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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1552
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
Date released
6
July, 2019
5
August, 2017
4
August, 2021
3
February, 2023
Available data
9
bed bedMethyl
9
bigBed bedMethyl
3
fastq
2
bed bed3+
Organism
18
Homo sapiens
Biosample type
11
tissue
primary cell
5
cell line
2
in vitro differentiated cells
Organ
4
musculature of body
4
pancreas
2
connective tissue
2
epithelium
1
brain
1
heart
1
kidney
1
liver
1
pericardium
Project
15
AMP
3
T1D
Genome assembly (visualization)
11
hg19
Lab
13
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
18 results
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RRBS
Capture-C
CRISPR genome editing followed by DNA sequencing
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
cell line
EndoC_BH1
2
3
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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