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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
9
July, 2019
6
August, 2017
2
August, 2021
2
February, 2023
Available data
13
bed bedMethyl
13
bigBed bedMethyl
4
fastq
2
bed bed3+
Organism
19
Homo sapiens
Biosample type
11
tissue
4
primary cell
2
cell line
2
in vitro differentiated cells
Organ
epithelium
5
musculature of body
4
kidney
4
pancreas
3
connective tissue
2
brain
2
heart
2
liver
1
eye
1
pericardium
1
vasculature
Project
17
AMP
2
T1D
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
19 results
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RRBS
Capture-C
HiChIP
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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