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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
3
August, 2021
1
December, 2019
Available data
84
txt
2
bed bed3+
1
tsv
Organism
87
Homo sapiens
Biosample type
86
tissue
2
in vitro differentiated cells
Organ
84
bone element
3
connective tissue
epithelium
2
kidney
2
pancreas
1
adipose tissue
Project
88
AMP
Genome assembly (visualization)
2
hg19
Lab
86
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
88 results
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RNA microarray
Capture-C
tissue
bone element
84
kidney interstitium
1
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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