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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
38
May, 2021
19
August, 2017
8
August, 2021
8
February, 2018
5
December, 2017
Available data
26
bam
22
tagAlign
18
fastq
Organism
78
Homo sapiens
Biosample type
317
tissue
138
cell line
78
in vitro differentiated cells
72
primary cell
Organ
19
connective tissue
7
embryo
4
epithelium
1
liver
1
pancreas
Project
78
AMP
Genome assembly (visualization)
GRCh38
119
hg19
Lab
41
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
small RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
38
adipocyte
19
neural progenitor cell
8
pancreatic endoderm
5
Hepatic endoderm
2
definitive endodermal cell
1
endocrine cell
1
hepatocyte
1
pancreatic PP cell
1
posterior foregut
1
primitive gut cell
1
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