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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
43
May, 2021
24
February, 2018
21
August, 2021
4
March, 2020
1
August, 2018
Available data
146
bam
121
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
3
bedpe bed3+
2
ibed
2
tsv
Organism
203
Homo sapiens
Biosample type
932
tissue
490
cell line
296
primary cell
203
in vitro differentiated cells
7
stem cell
Organ
68
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
203
AMP
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
166
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
1
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
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