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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
153
ChIP-seq
62
ATAC-seq
single cell RNA-seq
11
snATAC-seq
8
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
153
DNA binding
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
33
control
17
transcription factor
8
RNA binding protein
Date released
68
August, 2017
51
October, 2018
13
October, 2019
11
September, 2018
6
September, 2017
2
March, 2020
2
May, 2019
Available data
133
bam
111
bigWig
100
fastq
90
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
16
tagAlign
12
bed broadPeak
Organism
146
Homo sapiens
Biosample type
117
tissue
23
primary cell
13
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
151
AMP
2
T1D
Genome assembly (visualization)
113
hg19
107
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
primary cell
pancreatic endocrine cell
23
cell line
Panc1
13
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