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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
DNAme array
Assay category
172
DNA binding
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
154
May, 2021
18
August, 2021
Available data
131
bigWig
128
bed narrowPeak
84
bam
84
tagAlign
Organism
172
Homo sapiens
Biosample type
117
primary cell
37
in vitro differentiated cells
18
cell line
Organ
18
liver
Project
88
AMP
84
T1D
Genome assembly (visualization)
131
hg19
84
GRCh38
Lab
AMP-T2D consortium
154
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
in vitro differentiated cells
embryonic stem cell
37
cell line
HepG2
18
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