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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
137
DNA binding
Target of assay
53
transcription factor
51
histone
51
histone modification
33
control
27
narrow histone mark
24
broad histone mark
5
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
92
February, 2021
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
44
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
6
September, 2017
3
March, 2020
2
December, 2019
Available data
118
bam
102
bed narrowPeak
102
bigWig
94
fastq
50
bigBed narrowPeak
24
tagAlign
18
bed bed3+
Organism
137
Homo sapiens
Biosample type
64
in vitro differentiated cells
49
tissue
18
cell line
4
primary cell
3
stem cell
Organ
85
liver
23
epithelium
13
embryo
1
adipose tissue
1
connective tissue
Project
138
AMP
Genome assembly (visualization)
106
hg19
93
GRCh38
Lab
120
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ChIP-seq
RNA microarray
in vitro differentiated cells
neural progenitor cell
21
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
+ See 2 more…
tissue
liver
38
right lobe of liver
10
subcutaneous adipose tissue
1
cell line
HepG2
18
primary cell
hepatocyte
4
stem cell
hESC
3
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