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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
834
ChIP-seq
222
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
834
DNA binding
16
Transcription
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
169
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
172
October, 2019
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
50
May, 2020
48
December, 2017
40
May, 2024
16
July, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
665
bam
574
bigWig
538
bed narrowPeak
320
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
16
tsv
1
tagAlign bed3+
Organism
843
Homo sapiens
Biosample type
850
tissue
478
cell line
258
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
213
brain
158
liver
124
heart
119
pancreas
76
connective tissue
75
adipose tissue
73
blood vessel
vasculature
66
limb
35
nerve
30
musculature of body
28
artery
28
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
848
AMP
2
T1D
Genome assembly (visualization)
549
GRCh38
488
hg19
Lab
810
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
850 results
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Clear Filters
ChIP-seq
small RNA-seq
tissue
liver
145
1
islet of Langerhans
71
left cardiac atrium
40
body of pancreas
35
2
subcutaneous abdominal adipose tissue
36
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