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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
40
ChIP-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
small RNA-seq
Assay category
40
DNA binding
Target of assay
172
histone
histone modification
95
broad histone mark
77
narrow histone mark
28
transcription factor
12
control
11
RNA binding protein
Date released
20
May, 2021
15
August, 2021
5
May, 2024
Available data
19
bigWig
16
bed narrowPeak
Organism
40
Homo sapiens
Biosample type
17
in vitro differentiated cells
15
cell line
5
tissue
3
primary cell
Organ
15
liver
5
heart
Project
40
AMP
Genome assembly (visualization)
14
hg19
5
GRCh38
Lab
AMP-T2D consortium
20
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
target.investigated_as!
histone modification
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
17
cell line
HepG2
15
tissue
left cardiac atrium
5
primary cell
CD8-positive, alpha-beta T cell
3
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