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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
19
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
136
DNA binding
Target of assay
78
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
18
August, 2021
10
October, 2019
4
November, 2018
3
January, 2019
2
November, 2019
1
February, 2021
Available data
117
bam
105
fastq
65
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
4
tagAlign
3
tar
Organism
136
Homo sapiens
Biosample type
300
tissue
136
cell line
78
in vitro differentiated cells
70
primary cell
Organ
117
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
heart
2
vasculature
Project
136
AMP
Genome assembly (visualization)
403
hg19
GRCh38
Lab
118
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
organ_slims!
heart
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
cell line
HepG2
117
Panc1
7
GM12878
6
EndoC_BH1
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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