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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
Target of assay
182
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
112
August, 2017
48
October, 2019
31
May, 2020
29
October, 2018
25
November, 2017
23
May, 2019
16
April, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
September, 2017
3
November, 2018
1
January, 2019
Available data
174
bam
122
tagAlign
65
fastq
31
bed narrowPeak
31
bigWig
21
bed broadPeak
1
bigBed narrowPeak
Organism
316
Homo sapiens
Biosample type
317
tissue
138
cell line
78
in vitro differentiated cells
72
primary cell
Organ
73
liver
56
connective tissue
55
adipose tissue
44
brain
39
pancreas
24
musculature of body
19
limb
17
heart
16
blood vessel
16
vasculature
11
nerve
8
spleen
7
artery
7
kidney
4
gonad
4
ovary
2
eye
1
lymph node
Project
317
AMP
Genome assembly (visualization)
GRCh38
529
hg19
Lab
317
AMP-T2D consortium
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
317 results
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ChIP-seq
tissue
liver
70
islet of Langerhans
46
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
tibial nerve
11
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