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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
529
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
529
DNA binding
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
147
October, 2019
93
May, 2019
84
August, 2017
65
April, 2019
45
October, 2018
36
December, 2017
27
May, 2020
7
November, 2018
6
January, 2019
6
November, 2017
6
October, 2017
3
December, 2018
2
March, 2020
2
September, 2017
Available data
524
bigWig
505
bam
503
bed narrowPeak
325
bigBed narrowPeak
155
fastq
105
tagAlign
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
523
Homo sapiens
Biosample type
529
tissue
407
cell line
247
primary cell
119
in vitro differentiated cells
3
stem cell
Organ
114
brain
90
liver
84
pancreas
67
heart
57
blood vessel
57
vasculature
48
limb
24
nerve
21
artery
20
kidney
19
adipose tissue
19
connective tissue
19
musculature of body
12
spleen
1
pituitary gland
Project
527
AMP
2
T1D
Genome assembly (visualization)
550
GRCh38
529
hg19
Lab
529
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
529 results
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Clear Filters
ChIP-seq
tissue
liver
83
islet of Langerhans
31
heart left ventricle
29
body of pancreas
26
tibial nerve
24
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