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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
53
ChIP-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
53
DNA binding
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
3
August, 2021
2
September, 2017
Available data
1575
bam
1347
bigWig
1282
bed narrowPeak
854
fastq
798
bigBed narrowPeak
396
tagAlign
112
bed broadPeak
78
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
53
Homo sapiens
Biosample type
28
tissue
19
in vitro differentiated cells
3
primary cell
3
stem cell
Organ
21
pancreas
11
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
Project
53
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
53
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
primary cell
hepatocyte
3
stem cell
hESC
3
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