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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
29
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
130
DNA binding
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
19
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
6
February, 2021
5
October, 2019
1
June, 2019
Available data
111
bed narrowPeak
111
bigWig
89
bam
61
bigBed narrowPeak
6
tagAlign
Organism
130
Homo sapiens
Biosample type
123
tissue
6
cell line
1
primary cell
Organ
525
liver
216
brain
194
pancreas
136
connective tissue
130
heart
102
vasculature
100
epithelium
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
36
kidney
35
nerve
34
artery
31
musculature of body
20
spleen
17
vein
16
embryo
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
130
AMP
Genome assembly (visualization)
110
GRCh38
71
hg19
Lab
90
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
1
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