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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1354
ChIP-seq
1150
total RNA-seq
289
ATAC-seq
180
DNase-seq
174
single cell RNA-seq
87
RNA microarray
35
pCHi-C
28
WGBS
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1354
DNA binding
Target of assay
633
histone modification
632
histone
450
transcription factor
329
narrow histone mark
303
broad histone mark
266
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
397
November, 2017
218
October, 2019
176
August, 2017
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2018
51
December, 2017
50
May, 2020
34
December, 2018
25
January, 2019
18
August, 2021
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
1
May, 2021
Available data
1190
bam
988
bigWig
949
bed narrowPeak
730
bigBed narrowPeak
643
fastq
258
tagAlign
93
bed broadPeak
58
bigBed broadPeak
31
bed bed3+
3
tar
1
tagAlign bed3+
Organism
1347
Homo sapiens
Biosample type
867
tissue
484
cell line
primary cell
in vitro differentiated cells
3
stem cell
Organ
533
liver
209
brain
145
pancreas
89
heart
79
blood vessel
79
vasculature
74
connective tissue
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
kidney
35
nerve
34
artery
29
musculature of body
20
spleen
15
epithelium
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1350
AMP
4
T1D
Genome assembly (visualization)
939
hg19
899
GRCh38
Lab
1336
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
28
inconsistent control
27
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
34
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
1354 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
+ See 102 more…
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
stem cell
hESC
3
See all biosamples
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