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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
989
ChIP-seq
218
ATAC-seq
179
DNase-seq
4
FAIRE-seq
Assay category
989
DNA binding
Target of assay
557
histone modification
556
histone
427
transcription factor
285
narrow histone mark
271
broad histone mark
89
RNA binding protein
88
recombinant protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
307
November, 2017
158
October, 2019
93
May, 2019
65
April, 2019
63
November, 2018
62
August, 2017
45
October, 2018
40
May, 2024
38
December, 2017
30
December, 2018
27
May, 2020
21
January, 2019
14
August, 2021
11
November, 2019
6
October, 2017
5
February, 2021
3
March, 2020
1
May, 2021
Available data
1190
bam
1028
bigWig
989
bed narrowPeak
730
bigBed narrowPeak
643
fastq
258
tagAlign
93
bed broadPeak
58
bigBed broadPeak
31
bed bed3+
3
tar
1
tagAlign bed3+
Organism
983
Homo sapiens
Biosample type
595
tissue
392
cell line
primary cell
in vitro differentiated cells
2
stem cell
Organ
396
liver
164
brain
111
heart
92
pancreas
61
blood vessel
61
vasculature
54
blood
54
bodily fluid
48
limb
27
kidney
25
artery
24
nerve
19
musculature of body
13
epithelium
12
spleen
7
adipose tissue
7
connective tissue
1
pituitary gland
Project
985
AMP
4
T1D
Genome assembly (visualization)
912
GRCh38
893
hg19
Lab
935
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
14
Bing Ren, UCSD
Audit category:
28
inconsistent control
22
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
989 results
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Clear Filters
ChIP-seq
tissue
liver
82
left cardiac atrium
40
heart left ventricle
29
body of pancreas
26
tibial nerve
24
+ See 100 more…
cell line
HepG2
307
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
+ See 4 more…
stem cell
hESC
2
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