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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
92
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
92
DNA binding
Target of assay
80
control
9
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
10
October, 2019
4
August, 2021
4
November, 2018
3
February, 2021
3
January, 2019
2
November, 2019
Available data
465
bam
420
fastq
411
bigWig
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
92
Homo sapiens
Biosample type
312
tissue
92
cell line
88
in vitro differentiated cells
primary cell
1
stem cell
Organ
71
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
92
AMP
Genome assembly (visualization)
19
hg19
Lab
88
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
cell line
HepG2
71
Panc1
7
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
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