Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
37
ChIP-seq
31
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
37
DNA binding
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
6
control
4
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
19
December, 2017
13
November, 2019
4
May, 2021
1
March, 2020
Available data
37
bam
31
bed narrowPeak
31
bigWig
19
fastq
14
bigBed narrowPeak
3
tagAlign
Organism
37
Homo sapiens
Biosample type
primary cell
22
in vitro differentiated cells
15
cell line
Organ
548
liver
209
brain
148
pancreas
141
connective tissue
89
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
epithelium
37
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
35
AMP
2
T1D
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
37
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
37 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
Download