Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
31
ATAC-seq
23
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
23
DNA binding
Target of assay
27
histone
27
histone modification
narrow histone mark
13
broad histone mark
6
control
4
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
12
December, 2017
9
November, 2019
2
May, 2021
Available data
23
bam
17
bed narrowPeak
17
bigWig
12
fastq
9
bigBed narrowPeak
2
tagAlign
Organism
23
Homo sapiens
Biosample type
primary cell
14
in vitro differentiated cells
9
cell line
Organ
490
liver
112
connective tissue
106
pancreas
95
brain
91
heart
61
adipose tissue
61
blood vessel
61
vasculature
59
blood
59
bodily fluid
51
limb
28
artery
27
kidney
27
nerve
23
epithelium
20
musculature of body
18
spleen
14
embryo
Project
23
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
23
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
biosample_type!
primary cell
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
23 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
in vitro differentiated cells
hepatocyte
10
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
9
Download