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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
16
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
77
DNA binding
Target of assay
67
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
49
November, 2017
10
October, 2019
6
November, 2018
4
August, 2021
3
February, 2021
3
January, 2019
2
November, 2019
Available data
72
bam
58
fastq
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
3
tagAlign
Organism
77
Homo sapiens
Biosample type
338
tissue
79
in vitro differentiated cells
77
cell line
32
primary cell
Organ
56
liver
9
pancreas
6
blood
6
bodily fluid
3
kidney
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
Project
77
AMP
Genome assembly (visualization)
hg19
346
GRCh38
Lab
73
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
cell line
HepG2
56
Panc1
7
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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