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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
127
DNA binding
Target of assay
77
control
32
transcription factor
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
7
recombinant protein
4
RNA binding protein
Date released
66
November, 2017
18
August, 2021
17
October, 2019
13
November, 2019
8
February, 2021
November, 2018
3
January, 2019
1
March, 2020
1
May, 2021
Available data
405
bam
360
fastq
355
bigWig
336
bed narrowPeak
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
127
Homo sapiens
Biosample type
527
tissue
222
primary cell
184
in vitro differentiated cells
127
cell line
3
stem cell
Organ
84
liver
22
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
3
blood
3
bodily fluid
Project
125
AMP
2
T1D
Genome assembly (visualization)
58
hg19
25
GRCh38
Lab
109
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
November, 2018
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
cell line
HepG2
84
EndoC_BH1
15
Panc1
7
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
GM12878
3
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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