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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
65
August, 2017
43
May, 2021
42
December, 2017
24
February, 2018
21
August, 2021
Available data
143
bam
117
fastq
112
bigWig
107
bed narrowPeak
40
tagAlign
19
bed bed3+
13
bigBed narrowPeak
Organism
195
Homo sapiens
Biosample type
865
tissue
454
cell line
278
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
65
connective tissue
22
embryo
21
epithelium
14
liver
3
pancreas
Project
195
AMP
Genome assembly (visualization)
117
GRCh38
116
hg19
Lab
158
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
in vitro differentiated cells
adipocyte
65
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
14
definitive endodermal cell
8
primitive gut cell
8
Posterior foregut
5
Hepatic endoderm
4
cardiomyocytes
3
endocrine cell
3
pancreatic PP cell
3
posterior foregut
3
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