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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
47
DNA methylation
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
41
May, 2022
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
6
February, 2021
5
May, 2019
4
August, 2021
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
fastq
100
tagAlign
57
bigBed narrowPeak
41
zippedFastqFolder
21
bed broadPeak
21
bigBed broadPeak
6
tsv
3
bed bed3+
Organism
326
Homo sapiens
Biosample type
894
tissue
485
cell line
326
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
139
epithelium
117
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
195
AMP
84
T1D
47
HPAP
Genome assembly (visualization)
247
hg19
207
GRCh38
Lab
162
AMP-T2D consortium
117
Kyle Gaulton, UCSD
47
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
326 results
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ChIP-seq
WGBS
primary cell
monocyte
85
pancreatic alpha cell
13
31
CD8-positive, alpha-beta T cell
33
pancreatic beta cell
13
16
pancreatic endocrine cell
23
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