Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
274
DNA binding
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
48
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
242
bigWig
237
bam
221
bed narrowPeak
100
tagAlign
89
fastq
56
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
274
Homo sapiens
Biosample type
861
tissue
458
cell line
274
primary cell
181
in vitro differentiated cells
1
stem cell
Organ
88
epithelium
66
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
190
AMP
84
T1D
Genome assembly (visualization)
242
hg19
202
GRCh38
Lab
157
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
274 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
14
+ See 18 more…
See all biosamples
Download