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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
DNA binding
Target of assay
185
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
93
August, 2017
50
October, 2019
29
October, 2018
25
November, 2017
23
May, 2020
22
May, 2019
15
April, 2019
12
December, 2017
9
October, 2017
6
September, 2017
4
December, 2018
3
November, 2018
1
January, 2019
Available data
722
bam
bigWig
555
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
291
Homo sapiens
Biosample type
292
tissue
83
in vitro differentiated cells
73
cell line
32
primary cell
1
stem cell
Organ
66
liver
55
connective tissue
54
adipose tissue
46
brain
35
pancreas
18
limb
16
blood vessel
16
heart
16
vasculature
11
nerve
10
musculature of body
8
spleen
7
artery
7
kidney
4
gonad
4
ovary
2
eye
1
lymph node
Project
292
AMP
Genome assembly (visualization)
6
GRCh38
5
hg19
Lab
292
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
292 results
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Clear Filters
ChIP-seq
tissue
liver
63
islet of Langerhans
42
subcutaneous abdominal adipose tissue
35
tibial nerve
11
subcutaneous adipose tissue
10
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