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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
510
DNA binding
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
25
August, 2017
5
October, 2019
4
August, 2021
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
510
Homo sapiens
Biosample type
359
cell line
132
tissue
15
in vitro differentiated cells
4
primary cell
Organ
510
liver
198
pancreas
196
brain
129
epithelium
102
connective tissue
102
vasculature
99
blood vessel
93
heart
65
limb
60
blood
60
bodily fluid
52
kidney
37
adipose tissue
35
nerve
34
artery
22
embryo
20
spleen
17
musculature of body
17
vein
3
eye
1
pituitary gland
Project
510
AMP
Genome assembly (visualization)
415
hg19
360
GRCh38
Lab
510
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
510 results
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Clear Filters
ChIP-seq
cell line
HepG2
359
tissue
liver
122
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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