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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
204
DNase-seq
26
ATAC-seq
5
FAIRE-seq
Assay category
449
DNA binding
Target of assay
356
histone
356
histone modification
221
broad histone mark
135
narrow histone mark
91
transcription factor
38
RNA binding protein
11
chromatin remodeller
3
other context
3
other post-translational modification
Date released
97
May, 2019
64
April, 2019
63
November, 2017
58
October, 2019
45
October, 2018
30
December, 2018
27
August, 2017
23
June, 2019
21
January, 2019
15
November, 2018
6
October, 2017
Available data
1068
bam
918
bigWig
872
bed narrowPeak
449
bigBed narrowPeak
405
fastq
312
tagAlign
56
bed broadPeak
47
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
443
Homo sapiens
Biosample type
332
tissue
60
cell line
57
primary cell
Organ
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
36
epithelium
24
kidney
24
nerve
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
449
AMP
Genome assembly (visualization)
447
GRCh38
397
hg19
Lab
449
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
liver
BIOSAMPLE
ASSAY
449 results
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Clear Filters
ChIP-seq
tissue
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
tibial artery
18
+ See 25 more…
cell line
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
4
+ See 8 more…
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