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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
247
DNA binding
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
117
May, 2021
41
August, 2017
32
September, 2018
23
June, 2019
18
October, 2019
9
November, 2017
4
May, 2019
3
August, 2021
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
247
Homo sapiens
Biosample type
575
tissue
411
cell line
247
primary cell
115
in vitro differentiated cells
2
stem cell
Organ
70
epithelium
58
pancreas
18
vasculature
15
blood vessel
12
kidney
12
vein
9
brain
9
connective tissue
8
musculature of body
3
heart
3
liver
2
eye
Project
163
AMP
84
T1D
Genome assembly (visualization)
247
hg19
207
GRCh38
Lab
130
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic ductal cell
13
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