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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
0
ATAC-seq
Assay category
420
DNA binding
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
18
January, 2019
Available data
475
bam
420
fastq
414
bigWig
402
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
tsv
Organism
420
Homo sapiens
Biosample type
420
cell line
249
tissue
126
primary cell
120
in vitro differentiated cells
3
stem cell
Organ
360
liver
60
blood
60
bodily fluid
Project
420
AMP
Genome assembly (visualization)
362
hg19
315
GRCh38
Lab
420
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
420 results
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ChIP-seq
cell line
HepG2
360
GM12878
60
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