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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
512
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
512
DNA binding
Target of assay
378
transcription factor
83
control
82
recombinant protein
67
RNA binding protein
46
histone modification
45
histone
33
chromatin remodeller
25
broad histone mark
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
64
November, 2018
63
December, 2017
27
December, 2018
25
August, 2017
18
January, 2019
Available data
570
bam
512
fastq
486
bigWig
467
bed narrowPeak
406
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
512
Homo sapiens
Biosample type
420
cell line
77
tissue
15
in vitro differentiated cells
Organ
452
liver
147
pancreas
90
connective tissue
72
epithelium
60
blood
60
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
512
AMP
Genome assembly (visualization)
434
hg19
387
GRCh38
Lab
512
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
512 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
GM12878
60
tissue
liver
67
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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