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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
71
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
71
DNA binding
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
chromatin remodeller
Date released
26
August, 2017
21
September, 2018
18
December, 2017
6
November, 2017
Available data
128
bam
100
bigWig
96
bed narrowPeak
71
fastq
35
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
71
Homo sapiens
Biosample type
53
primary cell
18
in vitro differentiated cells
Organ
429
liver
147
pancreas
88
connective tissue
71
epithelium
50
blood
50
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
71
AMP
Genome assembly (visualization)
56
hg19
54
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
brain microvascular endothelial cell
3
+ See 1 more…
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
4
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