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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
147
ChIP-seq
69
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
147
DNA binding
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
74
August, 2017
35
October, 2018
32
September, 2018
6
September, 2017
Available data
198
bam
161
bigWig
147
fastq
140
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
140
Homo sapiens
Biosample type
77
tissue
70
primary cell
Organ
429
liver
147
pancreas
88
connective tissue
71
epithelium
50
blood
50
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
147
AMP
Genome assembly (visualization)
119
GRCh38
119
hg19
Lab
147
AMP-T2D consortium
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
tissue
body of pancreas
33
islet of Langerhans
28
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
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