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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
152
single cell RNA-seq
110
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
110
DNA binding
Target of assay
137
histone
137
histone modification
75
broad histone mark
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
94
May, 2021
16
August, 2021
Available data
79
bigWig
76
bed narrowPeak
44
bam
44
tagAlign
Organism
110
Homo sapiens
Biosample type
67
primary cell
27
in vitro differentiated cells
16
cell line
Organ
16
liver
Project
66
AMP
44
T1D
Genome assembly (visualization)
79
hg19
44
GRCh38
Lab
AMP-T2D consortium
94
Kyle Gaulton, UCSD
16
Bing Ren, UCSD
lab.title!
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
23
in vitro differentiated cells
embryonic stem cell
27
cell line
HepG2
16
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