Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
August, 2021
5
October, 2019
Available data
506
bam
452
fastq
415
bigWig
396
bed narrowPeak
352
bigBed narrowPeak
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
bed bed3+
3
tar
Organism
530
Homo sapiens
Biosample type
360
cell line
155
tissue
15
in vitro differentiated cells
Organ
530
liver
218
brain
218
pancreas
153
connective tissue
125
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
530
AMP
Genome assembly (visualization)
412
hg19
357
GRCh38
Lab
530
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
530 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
360
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
Download