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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
457
DNA binding
Target of assay
336
transcription factor
89
recombinant protein
80
control
63
RNA binding protein
38
histone
38
histone modification
28
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
438
bam
393
fastq
384
bigWig
365
bed narrowPeak
326
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
457
Homo sapiens
Biosample type
860
tissue
457
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
33
blood
33
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
455
AMP
2
T1D
Genome assembly (visualization)
380
hg19
319
GRCh38
Lab
439
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
BIOSAMPLE
ASSAY
457 results
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ChIP-seq
cell line
HepG2
378
GM12878
33
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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