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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
35
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
476
DNA binding
Target of assay
356
transcription factor
89
recombinant protein
77
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
February, 2021
1
March, 2020
1
May, 2021
Available data
457
bam
420
fastq
406
bigWig
387
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
Organism
476
Homo sapiens
Biosample type
867
tissue
476
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
Project
474
AMP
2
T1D
Genome assembly (visualization)
402
hg19
341
GRCh38
Lab
458
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
476 results
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ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
RCC 7860 HIF1a re-expression
4
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