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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
May, 2021
24
February, 2018
21
August, 2021
Available data
140
bam
120
fastq
110
bigWig
105
bed narrowPeak
34
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
155
Homo sapiens
Biosample type
867
tissue
483
cell line
158
primary cell
155
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
19
epithelium
15
liver
Project
155
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
155
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
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