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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ATAC-seq
263
single cell RNA-seq
236
total RNA-seq
179
ChIP-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
39
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
179
DNA binding
Target of assay
143
histone
143
histone modification
72
narrow histone mark
71
broad histone mark
24
control
12
transcription factor
1
RNA binding protein
Date released
115
August, 2017
May, 2021
23
October, 2019
19
August, 2021
14
November, 2017
7
October, 2017
1
April, 2019
Available data
bam
1227
bigWig
1165
bed narrowPeak
857
fastq
801
bigBed narrowPeak
308
tagAlign
114
bed broadPeak
79
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
179
Homo sapiens
Biosample type
145
tissue
19
cell line
15
in vitro differentiated cells
Organ
51
connective tissue
42
liver
36
adipose tissue
22
brain
22
musculature of body
20
pancreas
4
gonad
4
ovary
2
eye
1
heart
1
limb
1
lymph node
Project
179
AMP
Genome assembly (visualization)
38
hg19
2
GRCh38
Lab
161
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
1
missing controlled_by
month_released!
May, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
179 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
41
subcutaneous abdominal adipose tissue
36
liver
23
skeletal muscle tissue
22
brain
7
+ See 8 more…
cell line
HepG2
19
in vitro differentiated cells
adipocyte
14
neural progenitor cell
1
See all biosamples
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