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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
39
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
broad histone mark
7
control
2
RNA binding protein
Date released
27
August, 2017
10
December, 2017
2
August, 2021
September, 2017
Available data
1194
bam
963
bigWig
905
bed narrowPeak
733
fastq
559
bigBed narrowPeak
251
tagAlign
78
bed broadPeak
63
bigBed broadPeak
39
bed bed3+
3
tar
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
20
tissue
15
in vitro differentiated cells
2
primary cell
2
stem cell
Organ
13
pancreas
11
connective tissue
5
liver
4
adipose tissue
2
embryo
2
epithelium
Project
39
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
39
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
September, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
tissue
islet of Langerhans
13
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
primary cell
hepatocyte
2
stem cell
hESC
2
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