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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
212
DNA binding
Target of assay
172
histone
172
histone modification
95
broad histone mark
77
narrow histone mark
28
transcription factor
12
control
11
RNA binding protein
Date released
171
May, 2021
40
May, 2024
18
August, 2021
Available data
171
bigWig
168
bed narrowPeak
84
bam
84
tagAlign
Organism
229
Homo sapiens
Biosample type
133
primary cell
41
tissue
37
in vitro differentiated cells
18
cell line
Organ
40
heart
18
liver
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
128
AMP
101
T1D
Genome assembly (visualization)
131
hg19
124
GRCh38
Lab
AMP-T2D consortium
171
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
month_released!
September, 2017
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
pCHi-C
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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tissue
left cardiac atrium
40
thymus
1
in vitro differentiated cells
embryonic stem cell
37
cell line
HepG2
18
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