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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
26
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
419
DNA binding
Target of assay
245
transcription factor
98
histone
98
histone modification
73
control
66
recombinant protein
56
broad histone mark
42
narrow histone mark
38
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
405
bam
345
bigWig
324
bed narrowPeak
324
fastq
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
419
Homo sapiens
Biosample type
328
cell line
82
tissue
9
primary cell
Organ
315
liver
91
brain
19
epithelium
13
pancreas
6
vasculature
3
blood vessel
Project
419
AMP
Genome assembly (visualization)
292
hg19
291
GRCh38
Lab
419
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
419 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
EndoC_BH1
13
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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