Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
30
total RNA-seq
22
ATAC-seq
19
DNase-seq
7
WGBS
5
Hi-C
4
pCHi-C
2
FAIRE-seq
1
single cell RNA-seq
Assay category
312
DNA binding
Target of assay
196
histone
196
histone modification
141
narrow histone mark
71
transcription factor
55
broad histone mark
45
control
23
recombinant protein
21
RNA binding protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
289
bam
239
bigWig
237
bed narrowPeak
121
bigBed narrowPeak
70
fastq
49
tagAlign
2
bed broadPeak
2
bigBed broadPeak
1
tagAlign bed3+
Organism
312
Homo sapiens
Biosample type
205
tissue
83
cell line
24
primary cell
Organ
84
brain
59
limb
54
liver
40
blood vessel
40
vasculature
35
nerve
24
epithelium
23
artery
21
kidney
17
vein
15
blood
15
bodily fluid
13
pancreas
6
spleen
5
heart
4
gonad
4
ovary
2
eye
1
connective tissue
1
lymph node
1
pituitary gland
Project
312
AMP
Genome assembly (visualization)
239
GRCh38
239
hg19
Lab
312
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
tibial nerve
35
tibial artery
23
islet of Langerhans
21
liver
9
spleen
6
+ See 78 more…
cell line
HepG2
45
GM12878
15
Panc1
13
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
epithelial cell of proximal tubule
7
See all biosamples
Download