Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
424
DNA binding
Target of assay
310
transcription factor
89
recombinant protein
74
control
55
RNA binding protein
37
histone
37
histone modification
20
chromatin remodeller
19
broad histone mark
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
45
November, 2018
23
October, 2019
18
August, 2021
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
405
bam
360
fastq
357
bigWig
338
bed narrowPeak
299
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
424
Homo sapiens
Biosample type
867
tissue
424
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
422
AMP
2
T1D
Genome assembly (visualization)
353
hg19
292
GRCh38
Lab
406
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
BIOSAMPLE
ASSAY
424 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
378
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
See all biosamples
Download