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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1020
total RNA-seq
698
ChIP-seq
256
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
698
DNA binding
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
111
October, 2019
87
May, 2019
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
535
bam
452
bigWig
431
bed narrowPeak
289
bigBed narrowPeak
211
fastq
120
tagAlign
28
bed bed3+
26
bed broadPeak
Organism
691
Homo sapiens
Biosample type
698
tissue
484
cell line
270
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
brain
155
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
696
AMP
2
T1D
Genome assembly (visualization)
425
GRCh38
415
hg19
Lab
658
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
698 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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