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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
70
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
129
DNA binding
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
6
February, 2021
5
June, 2019
October, 2019
Available data
109
bed narrowPeak
109
bigWig
88
bam
64
bigBed narrowPeak
6
tagAlign
Organism
129
Homo sapiens
Biosample type
118
tissue
6
cell line
5
primary cell
Organ
547
liver
205
pancreas
152
connective tissue
brain
129
heart
105
epithelium
73
adipose tissue
62
vasculature
60
blood
60
bodily fluid
59
blood vessel
39
musculature of body
31
kidney
22
embryo
20
spleen
11
artery
7
limb
3
eye
Project
129
AMP
Genome assembly (visualization)
108
GRCh38
69
hg19
Lab
89
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
organ_slims!
brain
month_released!
October, 2019
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart right ventricle
13
right atrium auricular region
10
heart
9
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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